Below are two tables showing the two problem classes that prevent installation of foreign architecture binaries

We try to install all binary packages from a dummy architecture generated from amd64 (called armhf here) on amd64.

A machine parsable version can be retrieved in dose yaml format

Hover over a package name with your cursor for architecture and version information. Hovering over the arrows in the depchain columns will show the dependency that led from one package in the chain to the next.

src:r-bioc-shortread

Top 10 summary

The following is a summary of the full "missing" and "conflict" tables below. It only shows the first and last columns of the full tables and only displays the top 10 rows.

Missing

# of packages per missingUnsatisfied dependency
229r-api-bioc-3.19:armhf
147r-bioc-biocgenerics:armhf (>= 0.50.0)
40r-bioc-genomeinfodb:armhf (>= 1.40.1)
36r-bioc-zlibbioc:armhf (>= 1.50.0)
18r-cran-codetools:armhf
18r-cran-cpp11:armhf
18r-cran-futile.logger:armhf
18r-cran-snow:armhf
17r-bioc-biocgenerics:armhf (>= 0.37.0)
17r-bioc-genomeinfodb:armhf (>= 1.15.2)

Conflict

# of packages per conflictConflict
16r-base-core:amd64

missing

The packages in the third column cannot satisfy their (possibly transitive) dependencies because of the unsatisfied dependency in the last column. This is mostly because the binary package providing the dependency in the last column is Multi-Arch:no. Some of these packages need to be Multi-Arch:foreign instead. In some other cases, Build-Depends can be annotated with :native. The depchains column shows the dependency chain(s) from the packages in the third column to the unsatisfied dependency in the last column. The "(*)" placeholder in the depchains column represents any package in the third column. Hovering over the arrows in the depchains column with your cursor will show the dependency that led from one package in the chain to the next.

The output is first grouped by the shared unsatisfied dependency (last column) and then by shared dependency chain (fourth column). The groups are sorted by the number of packages missing the dependency in the last column. Within each group, the output is sorted by the number of packages sharing the same dependency chain.

# of packages per missing# of packages per depchainpackages with missing (possibly transitive) dependenciesDepchainsUnsatisfied dependency
229 79r-bioc-affxparser r-bioc-affy r-bioc-affyio r-bioc-alabaster.base (RM: #1086904) r-bioc-alabaster.matrix (RM: #1086904) r-bioc-basilisk r-bioc-beachmat r-bioc-biobase r-bioc-biocneighbors r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-biovizbase r-bioc-bluster r-bioc-bsseq r-bioc-chemminer r-bioc-cner r-bioc-dada2 r-bioc-degnorm r-bioc-delayedarray r-bioc-demixt r-bioc-densvis r-bioc-deseq r-bioc-deseq2 r-bioc-destiny r-bioc-dirichletmultinomial r-bioc-dnacopy r-bioc-dropletutils r-bioc-dss r-bioc-ebseq r-bioc-edger r-bioc-eir r-bioc-fmcsr r-bioc-genefilter r-bioc-genomicalignments r-bioc-genomicranges r-bioc-glmgampoi r-bioc-gosemsim r-bioc-graph r-bioc-grohmm r-bioc-gsva r-bioc-hdf5array r-bioc-hilbertvis r-bioc-impute r-bioc-iranges r-bioc-isoformswitchanalyzer r-bioc-limma r-bioc-lpsymphony r-bioc-makecdfenv r-bioc-metapod r-bioc-monocle r-bioc-multtest r-bioc-oligo r-bioc-pcamethods r-bioc-preprocesscore r-bioc-pwalign r-bioc-rbgl r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rots r-bioc-rsamtools r-bioc-rsubread r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-snpstats r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-sva r-bioc-tfbstools r-bioc-titancna r-bioc-variantannotation r-bioc-xvector(*) r-api-bioc-3.19:armhf
30r-bioc-alabaster.base (RM: #1086904) r-bioc-alabaster.matrix (RM: #1086904) r-bioc-biocneighbors r-bioc-biocsingular r-bioc-biostrings r-bioc-biovizbase r-bioc-bluster r-bioc-bsseq r-bioc-degnorm r-bioc-delayedarray r-bioc-deseq2 r-bioc-dirichletmultinomial r-bioc-dropletutils r-bioc-genomicalignments r-bioc-grohmm r-bioc-gsva r-bioc-hdf5array r-bioc-iranges r-bioc-isoformswitchanalyzer r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sparsearray r-bioc-variantannotation r-bioc-xvector(*)r-bioc-s4vectors
20r-bioc-biostrings r-bioc-biovizbase r-bioc-bsseq r-bioc-delayedarray r-bioc-deseq2 r-bioc-dirichletmultinomial r-bioc-dropletutils r-bioc-genomicalignments r-bioc-grohmm r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-shortread r-bioc-sparsearray r-bioc-titancna r-bioc-variantannotation r-bioc-xvector(*)r-bioc-iranges
16r-bioc-biocneighbors r-bioc-biocsingular r-bioc-bluster r-bioc-bsseq r-bioc-deseq2 r-bioc-dropletutils r-bioc-dss r-bioc-genomicalignments r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sva(*)r-bioc-biocparallel
15r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-degnorm r-bioc-deseq2 r-bioc-dropletutils r-bioc-genomicalignments r-bioc-grohmm r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-rtracklayer r-bioc-scuttle r-bioc-shortread r-bioc-titancna r-bioc-variantannotation(*)r-bioc-genomicranges
13r-bioc-affy r-bioc-bsseq r-bioc-deseq2 r-bioc-dss r-bioc-genefilter r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-makecdfenv r-bioc-multtest r-bioc-oligo r-bioc-pcamethods r-bioc-shortread r-bioc-variantannotation(*)r-bioc-biobase
11r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-genomicalignments r-bioc-isoformswitchanalyzer r-bioc-oligo r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-biostrings
8r-bioc-biostrings r-bioc-isoformswitchanalyzer r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-sparsearray r-bioc-variantannotation(*)r-bioc-xvector
6r-bioc-biovizbase r-bioc-degnorm r-bioc-genomicalignments r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-rsamtools
5r-bioc-biovizbase r-bioc-degnorm r-bioc-grohmm r-bioc-rtracklayer r-bioc-shortread(*)r-bioc-genomicalignments
3r-bioc-cner r-bioc-isoformswitchanalyzer r-bioc-shortread(*)r-bioc-pwalign
3r-bioc-rsamtools r-bioc-shortread r-bioc-variantannotation(*)r-bioc-rhtslib
1q2-dada2(*)r-bioc-dada2r-bioc-shortread
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biobase
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biocparallel
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-genomicalignments
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-genomicranges
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-iranges
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-pwalign
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-rhtslib
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-rsamtools
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-xvector
1r-bioc-dada2(*)r-bioc-shortread
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biobase
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biocparallel
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-genomicalignments
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-genomicranges
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-iranges
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-pwalign
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-rhtslib
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-rsamtools
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-xvector
147 37r-bioc-affy r-bioc-alabaster.matrix (RM: #1086904) r-bioc-beachmat r-bioc-biobase r-bioc-biocsingular r-bioc-biostrings r-bioc-biovizbase r-bioc-bsseq r-bioc-chemminer r-bioc-cner r-bioc-delayedarray r-bioc-deseq2 r-bioc-dirichletmultinomial r-bioc-dropletutils r-bioc-eir r-bioc-genomicalignments r-bioc-glmgampoi r-bioc-graph r-bioc-hdf5array r-bioc-iranges r-bioc-isoformswitchanalyzer r-bioc-multtest r-bioc-oligo r-bioc-pcamethods r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-snpstats r-bioc-sparsearray r-bioc-titancna r-bioc-variantannotation r-bioc-xvector(*) r-bioc-biocgenerics:armhf (>= 0.50.0)
30r-bioc-alabaster.base (RM: #1086904) r-bioc-alabaster.matrix (RM: #1086904) r-bioc-biocneighbors r-bioc-biocsingular r-bioc-biostrings r-bioc-biovizbase r-bioc-bluster r-bioc-bsseq r-bioc-degnorm r-bioc-delayedarray r-bioc-deseq2 r-bioc-dirichletmultinomial r-bioc-dropletutils r-bioc-genomicalignments r-bioc-grohmm r-bioc-gsva r-bioc-hdf5array r-bioc-iranges r-bioc-isoformswitchanalyzer r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sparsearray r-bioc-variantannotation r-bioc-xvector(*)r-bioc-s4vectors
20r-bioc-biostrings r-bioc-biovizbase r-bioc-bsseq r-bioc-delayedarray r-bioc-deseq2 r-bioc-dirichletmultinomial r-bioc-dropletutils r-bioc-genomicalignments r-bioc-grohmm r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-shortread r-bioc-sparsearray r-bioc-titancna r-bioc-variantannotation r-bioc-xvector(*)r-bioc-iranges
13r-bioc-affy r-bioc-bsseq r-bioc-deseq2 r-bioc-dss r-bioc-genefilter r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-makecdfenv r-bioc-multtest r-bioc-oligo r-bioc-pcamethods r-bioc-shortread r-bioc-variantannotation(*)r-bioc-biobase
11r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-genomicalignments r-bioc-isoformswitchanalyzer r-bioc-oligo r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-biostrings
8r-bioc-biostrings r-bioc-isoformswitchanalyzer r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-sparsearray r-bioc-variantannotation(*)r-bioc-xvector
6r-bioc-biovizbase r-bioc-degnorm r-bioc-genomicalignments r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-rsamtools
5r-bioc-biovizbase r-bioc-degnorm r-bioc-grohmm r-bioc-rtracklayer r-bioc-shortread(*)r-bioc-genomicalignments
3r-bioc-cner r-bioc-isoformswitchanalyzer r-bioc-shortread(*)r-bioc-pwalign
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biobase
1q2-dada2(*)r-bioc-dada2r-bioc-shortread
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-genomicalignments
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-iranges
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-pwalign
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-rsamtools
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-xvector
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biobase
1r-bioc-dada2(*)r-bioc-shortread
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-genomicalignments
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-iranges
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-pwalign
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-rsamtools
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-xvector
40 12r-bioc-biostrings r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-genomicalignments r-bioc-grohmm r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-titancna r-bioc-variantannotation(*) r-bioc-genomeinfodb:armhf (>= 1.40.1)
11r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-genomicalignments r-bioc-isoformswitchanalyzer r-bioc-oligo r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-biostrings
6r-bioc-biovizbase r-bioc-degnorm r-bioc-genomicalignments r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-rsamtools
5r-bioc-biovizbase r-bioc-degnorm r-bioc-grohmm r-bioc-rtracklayer r-bioc-shortread(*)r-bioc-genomicalignments
1q2-dada2(*)r-bioc-dada2r-bioc-shortread
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-genomicalignments
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-rsamtools
1r-bioc-dada2(*)r-bioc-shortread
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-genomicalignments
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-rsamtools
36 11r-bioc-affy r-bioc-affyio r-bioc-makecdfenv r-bioc-oligo r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-snpstats r-bioc-variantannotation r-bioc-xvector(*) r-bioc-zlibbioc:armhf (>= 1.50.0)
8r-bioc-biostrings r-bioc-isoformswitchanalyzer r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-sparsearray r-bioc-variantannotation(*)r-bioc-xvector
6r-bioc-biovizbase r-bioc-degnorm r-bioc-genomicalignments r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-rsamtools
3r-bioc-rsamtools r-bioc-shortread r-bioc-variantannotation(*)r-bioc-rhtslib
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-rhtslib
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-rsamtools
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-xvector
1q2-dada2(*)r-bioc-dada2r-bioc-shortread
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-rhtslib
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-rsamtools
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-xvector
1r-bioc-dada2(*)r-bioc-shortread
18 16r-bioc-biocneighbors r-bioc-biocsingular r-bioc-bluster r-bioc-bsseq r-bioc-deseq2 r-bioc-dropletutils r-bioc-dss r-bioc-genomicalignments r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sva(*)r-bioc-biocparallel r-cran-codetools:armhf
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biocparallel
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biocparallel
18 16r-bioc-biocneighbors r-bioc-biocsingular r-bioc-bluster r-bioc-bsseq r-bioc-deseq2 r-bioc-dropletutils r-bioc-dss r-bioc-genomicalignments r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sva(*)r-bioc-biocparallel r-cran-cpp11:armhf
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biocparallel
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biocparallel
18 16r-bioc-biocneighbors r-bioc-biocsingular r-bioc-bluster r-bioc-bsseq r-bioc-deseq2 r-bioc-dropletutils r-bioc-dss r-bioc-genomicalignments r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sva(*)r-bioc-biocparallel r-cran-futile.logger:armhf
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biocparallel
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biocparallel
18 16r-bioc-biocneighbors r-bioc-biocsingular r-bioc-bluster r-bioc-bsseq r-bioc-deseq2 r-bioc-dropletutils r-bioc-dss r-bioc-genomicalignments r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sva(*)r-bioc-biocparallel r-cran-snow:armhf
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biocparallel
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biocparallel
17 15r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-degnorm r-bioc-deseq2 r-bioc-dropletutils r-bioc-genomicalignments r-bioc-grohmm r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-rtracklayer r-bioc-scuttle r-bioc-shortread r-bioc-titancna r-bioc-variantannotation(*)r-bioc-genomicranges r-bioc-biocgenerics:armhf (>= 0.37.0)
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-genomicranges
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-genomicranges
17 15r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-degnorm r-bioc-deseq2 r-bioc-dropletutils r-bioc-genomicalignments r-bioc-grohmm r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-rtracklayer r-bioc-scuttle r-bioc-shortread r-bioc-titancna r-bioc-variantannotation(*)r-bioc-genomicranges r-bioc-genomeinfodb:armhf (>= 1.15.2)
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-genomicranges
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-genomicranges
11 11r-bioc-biovizbase r-bioc-bsseq r-bioc-cner r-bioc-genomicalignments r-bioc-isoformswitchanalyzer r-bioc-oligo r-bioc-pwalign r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation(*)r-bioc-biostrings r-cran-crayon:armhf
7 5r-bioc-biovizbase r-bioc-degnorm r-bioc-grohmm r-bioc-rtracklayer r-bioc-shortread(*)r-bioc-genomicalignments r-bioc-summarizedexperiment:armhf (>= 1.34.0)
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-genomicalignments
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-genomicalignments
4 2r-bioc-shortread r-cran-hmisc(*) r-cran-latticeextra:armhf
1q2-dada2(*)r-bioc-dada2r-bioc-shortread
1r-bioc-dada2(*)r-bioc-shortread
3 1q2-dada2(*)r-bioc-dada2r-bioc-shortread r-cran-hwriter:armhf
1r-bioc-dada2(*)r-bioc-shortread
1r-bioc-shortread(*)

conflict

The packages in the third column cannot satisfy their (possibly transitive) dependencies because the last package(s) in the first depchain have an unsatisfied conflict which is shown in the last column. The second depchain column shows the dependency chain(s) to the package which the last package(s) in the first depchain conflict with. Sometimes, multiple dependency chains sharing the same conflict exist. Hovering over the arrows in the depchains column with your cursor will show the dependency that led from one package in the chain to the next.

The output is first grouped by the shared conflicting dependency (last column) and then by the shared dependency chains (fourth and fifth column). The groups are sorted by the number of packages sharing the conflict in the last column. Within each group, the output is sorted by the number of packages sharing the same dependency chains.

# of packages per conflict# of packages per depchainpackages with (possibly transitive) conflicting dependenciesDepchain 1Depchain2Conflict
16 14r-bioc-biocneighbors r-bioc-biocsingular r-bioc-bluster r-bioc-bsseq r-bioc-deseq2 r-bioc-dss r-bioc-genomicalignments r-bioc-gsva r-bioc-isoformswitchanalyzer r-bioc-rsamtools r-bioc-scuttle r-bioc-shortread r-bioc-singler r-bioc-sva(*)r-bioc-biocparallelr-cran-bhr-base-core(*)r-base-core r-base-core:amd64
1q2-dada2(*)r-bioc-dada2r-bioc-shortreadr-bioc-biocparallelr-cran-bhr-base-core(*)r-base-core
1r-bioc-dada2(*)r-bioc-shortreadr-bioc-biocparallelr-cran-bhr-base-core(*)r-base-core

generated: 20241118T000000Z


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